Glycoaminoglycan (GAGs_MPS DMB) Analysis
Test: |
Full Metabolic Evaluation URINE |
Mnemonic: |
PMSUR |
NHRPL Tariff code: |
4221 + 4321 + 4188 + 4248 + 4268 + (4285 x2) + 4216 + 4326 + 4194 + (4020 x 2) + 4022 |
Tariff (including VAT): |
R 7 554.51 |
Description: |
Biochemical analyses, quntification/qualification and interpretation: U‐Creatinine, U‐Uric Acid, U‐Labstix, U‐ Reducing substances, QU‐Organic acids, U‐TLC‐Oligosaccharides, QU‐Fructose, U‐MPS‐DMB‐screen, U‐MPS GAGs LCMS/MS, QU‐Amino Acids, QU‐Carnitine profile. |
Turnaround time: |
15 work days from receipt of sample at CHM |
Comments: |
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Sample requirements, viability, stability: |
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Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequent diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
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Method: |
Pre‐analytical screen / GC‐MS / LC‐MS/MS / Spectrophotometric / Thin‐layer chromotography |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Glycosaminoglycan (GAGs/MPS) analysis (Total and individual GAG assessment) ‐ URINE
Thin Layer Chromatography (TLC) of Oligosaccarides & Quantitative Fructose – Urine
Test: |
Thin layer chromatography of mono‐/oligosaccharides (qualitative) & quantitative fructose URINE |
Mnemonic: |
POLIGOu & PFRUCu |
NHRPL Tariff code: |
4221 + 4321 + 4188 + (4285 x 2) |
Tariff (including VAT): |
R 509.89 |
Description: |
Above price includes the assay and interpretation:
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Turnaround time: |
As a single test: 10 work days from receipt of sample at CHM. As part of a screening panel: 15 work days from receipt of sample at CHM. |
Comments: |
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Sample requirements, viability, stability: |
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Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequen diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
|
Method: |
Carbohydrates: Thin layer chromatography assay Fructose : Spectrophotometric assay |
Reference range & units: |
Carbohydrates: Reference ranges and units not applicable. Fructose ref range available on request |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Thin layer chromatography of mono‐/oligosaccharides (qualitative) & quantitative fructose URINE - pdf
(CDG)‐ Serum
Test: |
Intact glycoprotein (transferrin) analysis to screen for congenital disorder of glycosylation (CDG) ‐ Serum |
Mnemonic: |
PCDGQUANT |
NHRPL Tariff code: |
4268 |
Tariff (including VAT): |
R 2 639.80 |
Description: |
Above price includes the assay, quantification and interpretation |
Turnaround time: |
30 work days from receipt of sample at CHM (analysis performed at external lab) |
Comments: |
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Sample requirements, viability, stability: |
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Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequent diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
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Method: |
LC‐MS/MS glycoprotein intact (transferrin) analysis ‐ Send‐away test |
Reference range & units: |
Reference ranges and units not applicable as pattern recognition is utilised for CDG typing. |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Biotinidase Enzymatic Activity Determination – Blood card [DBS]
Test: |
Biotinidase Enzyme Activity Determination ‐ BLOOD CARD SAMPLE [DBS] |
Mnemonic: |
NPBIOT |
NHRPL Tariff code: |
4268 |
Tariff (including VAT): |
R1,133.42 |
Description: |
Above price includes the assay, quantification and interpretation |
Turnaround time: |
10 work days from receipt of sample at CHM |
Comments: |
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Sample requirements, viability, stability: |
|
Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequent diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
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Method: |
Biotinidase assay kit: PERKIN ELMER |
Reference range & units: |
Biotinidase enzyme acitity is expressed in % in relation to normal activity. Reference range can be provided upon request |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Biotinidase Enzyme Activity Determination ‐ BLOOD CARD SAMPLE [DBS] - pdf
Quantitative Galactose-1-Phosphate – Blood card [DBS]
Test: |
Quantitative Galactose‐1‐Phosphate BLOOD CARD SAMPLE [DBS] |
Mnemonic: |
NPGAL |
NHRPL Tariff code: |
4238 |
Tariff (including VAT): |
R 622.81 |
Description: |
Above price includes the assay, quantification and interpretation |
Turnaround time: |
10 work days from receipt of sample at CHM |
Comments: |
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Sample requirements, viability, stability: |
|
Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequent diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
|
Method: |
Tandem‐Mass Spectrometry |
Reference ranges & units: |
Reference ranges is dependent on undiagnosed vs diagnosed patients on therapeutic intervention and can be provided upon request Units: mmol/l |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Quantitative Galactose‐1‐Phosphate BLOOD CARD SAMPLE [DBS]
Quantitative Immunoreactive Trypsinogen – Blood card [DBS]
Test: |
Immunoreactive trypsinogen (IRT): BLOOD CARD SAMPLE [DBS] |
Mnemonic: |
NPIRT |
NHRPL Tariff code |
4592 |
Tariff (including VAT): |
R 622.81 |
Description: |
Above price includes the assay, quantification and interpretation |
Turnaround time: |
10 work days from receipt of sample at CHM |
Comments: |
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Sample requirements, viability, stability: |
|
Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequent diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
|
Method: |
Immunochemistry |
Reference ranges & units: |
Refererance range can be provided apon request |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Immunoreactive trypsinogen (IRT): BLOOD CARD SAMPLE [DBS] - pdf
Newborn Screening National
Test: |
Newborn Screening |
Mnemonic: |
NNBS |
NHRPL Tariff code: |
4083 or (4238 x 3 + 4268 + 4592) |
Tariff (including VAT): |
R 1 646.16 |
Description: |
Carnitines: Free carnitine (C0), Acetyl (C2)‐, Propionyl (C3)‐, Butyryl (C4)‐, Isovaleryl (C5)‐, 3‐Hydroxyisovaleryl (C5OH)‐, Glutaryl (C5DC)‐, Hexanoyl (C6)‐, Octanoyl (C8)‐, Decanoyl (C10)‐, Decenoyl (C10:1)‐, Myristoyl (C14)‐ , Tetradecenoyl (C14:1)‐, Palmitoyl (C16)‐ and 3‐Hydroxyhexadecanoyl‐carnitine Amino acids: Phenylalanine, Leucine/Isoleucine, Valine, Methionine, Citrulline and Tyrosine Other: Galactose‐1‐phosphate, Biotinidase enzyme activity, Immunoreactive trypsinogen, 17‐ Hydroxyprogesterone, Thyroid stimulating hormone |
Turnaround time: |
10 work days from receipt of sample at CHM. |
Comments: |
Primary disorders targeted in the newborn screening program: Amino Acid Disorders: Classic phenylketonuria, Homocystinuria, Maple syrup urine disease, citrullinemia Type I. Organic acid disorders: Isovaleric acidemia, Propionic acidemia, Methylmalonic acidemia, Glutaric acidemia type I, Holocarboxylase synthase deficiency, 3‐Methylcrotonyl‐CoA carboxylase deficiency, 3‐Hydroxy‐3‐ methyglutaric aciduria, ß‐Ketothiolase deficiency. Fatty acid oxidation disorders: Medium‐chain acyl‐CoA dehydrogenase deficiency, Very‐long‐chain Acyl‐CoA dehydrogenase deficiency, Long‐chain L‐3‐hydroxyacyl‐CoA dehydrogenase deficiency/Trifunctional protein deficiency, Carnitine uptake defect/Carnitine transport defect Other: Classic galactosemia, Congenital adrenal hyperplasia, Primary congenital hypothyroidism, Biotinidase deficiency, Cystic fibrosis
The primary disorders are diseases for which testing has a high diagnostic accuracy and where early intervention improves outcome. Note however that the test is a screening test. A negative result does not completely exclude the primary disorders. Due to the non‐specific nature of metabolic markers, disease other than the primary disorders may be identified. |
Sample required: |
Whatman 903 dried blood spot card with 4 blood spots. Cards must be sent on a seperate requisition number and should not include any other requests/samples. Samples must be collected according to the NBS sample collection starndard operating procedure. EDTA samples are not viable for NBS testing. Air dry collected samples for at least two hours before placing in a sealed paper envelope. Collected samples should be kept at room temperature. Avoid high humidity and temperatures. Samples must reach the CHM within two days from collection. |
Information Required with sample(s): |
Information that is required for the interpretation of the results:
Absent clinical details may affect the interpretation of results and recommendations. |
Method: |
Tandem‐Mass spectrometry, Fluoro‐immunoassay, Enzymatic analysis |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Newborn Screening - pdf
Newborn Screening International
Test: |
Newborn Screening (INTERNATIONAL) |
Mnemonic: |
NNBSInt |
NHRPL Tariff code: |
4083 or (4238 x 3 + 4268 + 4592) |
Tariff (including VAT): |
R 1 186.19 |
Description: |
Carnitines: Free carnitine (C0), Acetyl (C2)‐, Propionyl (C3)‐, Butyryl (C4)‐, Isovaleryl (C5)‐, 3‐ Hydroxyisovaleryl (C5OH)‐, Glutaryl (C5DC)‐, Hexanoyl (C6)‐, Octanoyl (C8)‐, Decanoyl (C10)‐, Decenoyl (C10:1)‐, Myristoyl (C14)‐, Tetradecenoyl (C14:1)‐, Palmitoyl (C16)‐ and 3‐Hydroxyhexadecanoyl‐ carnitine Amino acids: Phenylalanine, Leucine/Isoleucine, Valine, Methionine, Citrulline and Tyrosine Other: Galactose‐1‐phosphate, Biotinidase enzyme activity, Immunoreactive trypsinogen, 17‐ Hydroxyprogesterone, Thyroid stimulating hormone |
Turnaround time: |
10 work days from receipt of sample at CHM. |
Comments: |
Primary disorders targeted in the newborn screening program: Amino Acid Disorders: Classic phenylketonuria, Homocystinuria, Maple syrup urine disease, citrullinemia Type I. Organic acid disorders: Isovaleric acidemia, Propionic acidemia, Methylmalonic acidemia, Glutaric acidemia type I, Holocarboxylase synthase deficiency, 3‐Methylcrotonyl‐CoA carboxylase deficiency, 3‐ Hydroxy‐3‐methyglutaric aciduria, ß‐Ketothiolase deficiency. Fatty acid oxidation disorders: Medium‐chain acyl‐CoA dehydrogenase deficiency, Very‐long‐chain Acyl‐ CoA dehydrogenase deficiency, Long‐chain L‐3‐hydroxyacyl‐CoA dehydrogenase deficiency/Trifunctional protein deficiency, Carnitine uptake defect/Carnitine transport defect Other: Classic galactosemia, Congenital adrenal hyperplasia, Primary congenital hypothyroidism, Biotinidase deficiency, Cystic fibrosis
The primary disorders are diseases for which testing has a high diagnostic accuracy and where early intervention improves outcome. Note however that the test is a screening test. A negative result does not completely exclude the primary disorders. Due to the non‐specific nature of metabolic markers, disease other than the primary disorders may be identified. |
Sample required: |
Whatman 903 dried blood spot card with 4 blood spots. Cards must be sent on a seperate requisition number and should not include any other requests/samples. Samples must be collected according to the NBS sample collection starndard operating procedure. EDTA samples are not viable for NBS testing. Air dry collected samples for at least two hours before placing in a sealed paper envelope. Collected samples should be kept at room temperature. Avoid high humidity and temperatures. Samples must reach the CHM within two days from collection. |
Information Required with sample(s): |
Information that is required for the interpretation of the results:
Absent clinical details may affect the interpretation of results and recommendations. |
Method: |
Tandem‐Mass spectrometry, Fluoro‐immunoassay, Enzymatic analysis |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
PLEASE NOTE: Collection, courier and administration costs are not included. Protocol for each individual test is available on our website: www.pliem.co.za Valid: 1 January 2023 ‐ 31 December 2023
Newborn Screening (INTERNATIONAL)
6-Plex LSD
Test: |
Selective Lysosomal disorder screening [6‐Plex] ‐ BLOOD SPOT SAMPLES [DBS] |
Mnemonic: |
PPLSDg |
NHRPL Tariff code |
NA |
Tariff (including VAT): |
Sponsered testing |
Description: |
Quantitative enzyme activity analysis of acid beta‐glucosidase (GBA), acid alpha‐glucosidase (GAA), Sphingomyelinase (SMPD1), alpha‐galactosidase (GLA), galactocerebrosidase (GALC), alpha‐L‐iduronidase (IDUA). The tests also include the following reflex international testing based on the following criteria:
Please note that selecting all options or none will result in no reflex testing. |
Turnaround time: |
10 work days from receipt of sample at CHM. The turnaround time does not apply to tests that were referred internationally. |
Comments: |
The above test can be utilised to rule in or exclude the following disorders on enzymatic and subsequent genetic level. These include: Fabry disease (α‐galactosidase def), Krabbe disease (galactocerebrosidase def), Gaucher disease (ß‐glucosidase def), Niemann‐Pick disease A / B (sphingomyelinase def), MPS I (α‐L‐ iduronidase def), Pompe / Glycogen storage defect type II (α‐glucosidase def). Lyso‐Gl1 substrate accumulation for Gaucher disease and Lyso‐Gl3 substrate accumulation in female Fabry patients can be performed upon request. |
Sample requirements, viability, stability: |
|
Information Required with sample(s): |
Absent clinical details may affect the interpretation of results and recommendations for further/additional testing and subsequent diagnosis of a metabolic disorder. Consent to use below information (point 4) is required according POPIA regulation.
patient/family would like to be contacted by our rare disease biobank. |
Method: |
Liquid Chromatography‐Tandem Mass Spectrometry (LC‐MS/MS) |
Reference ranges & units: |
Referance range provided upon request. Unit: nmol/mL/hr |
Contact no for results & other enquiries: |
018 299 2312 (Call centre): 1) Await for available agent to answer OR 2) Press 2 to leave a message |
E‐mail address: |
|
Delivery address for samples: |
Center for Human Metabolomics (CHM), |
Selective Lysosomal disorder screening [6‐Plex] ‐ BLOOD SPOT SAMPLES [DBS] - pdf